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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23950637_23955565_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23950637 - 23955565
Intron Length:
4929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
GTCTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TGATGTTCAATT
Flanking Amino Acid:
VQIHSCTSVKGIAPKLRFST
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
77.7
0.62
0.8
69.7
36.7
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
49.8
0.07
1.9
69.64
41.7

Associated Gene:

Gene:
SPATA6
Ensembl Gene ID:
ENSAPLG00000007793
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036683
23928210 - 23965138
36929