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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2395512_2404619_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2395512 - 2404619
Intron Length:
9108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCTG
5'SS Class:
major
3'SS Sequence:
TGTTTAATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCATTTAATA
Flanking Amino Acid:
AFGSILGDTKVREAMAPIKF
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
63.6
48.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.1
0.7
0.9
74.9
38.8
Minor 5ss
47
-0.3
2.9
64.9
46.4
Minor BPS
68.6
0.58
1.4
77.77
32.5

Associated Gene:

Gene:
DPYD
Ensembl Gene ID:
ENSAPLG00000012045
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012599
2220811 - 2563107
342297
ENSAPLT00000046083
2220811 - 2558897
338087
ENSAPLT00000022824
2220811 - 2563107
342297