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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23955620_23955715_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23955620 - 23955715
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ACTTCTTCAAAT
Flanking Amino Acid:
ILMKRSSSFTILPVQVLNVQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82.8
0.74
0.9
80.1
32
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
61.1
0.43
1.6
75.88
40.7

Associated Gene:

Gene:
SPATA6
Ensembl Gene ID:
ENSAPLG00000007793
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036683
23928210 - 23965138
36929