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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23955841_23957214_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23955841 - 23957214
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTTTTCCAATT
Flanking Amino Acid:
VLELIQLVPPVGEILATYEE
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
87
0.83
0.7
85.9
27.9
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
49.9
0.08
1.8
73.14
38.1

Associated Gene:

Gene:
SPATA6
Ensembl Gene ID:
ENSAPLG00000007793
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024863
23947218 - 23965138
17921
ENSAPLT00000008129
23928210 - 23965138
36929
ENSAPLT00000036683
23928210 - 23965138
36929