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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_23958225_23959786_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23958225 - 23959786
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
FFQEKLVFEKTFADIVDPAD
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.8
77.6
40.7
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SPATA6
Ensembl Gene ID:
ENSAPLG00000007793
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036683
23928210 - 23965138
36929
ENSAPLT00000024863
23947218 - 23965138
17921
ENSAPLT00000008129
23928210 - 23965138
36929