About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2404831_2406504_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2404831 - 2406504
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTGCTTTTACT
Flanking Amino Acid:
FTNIRAVPEEMELAKEEKCE
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
86.9
0.83
0.7
81
30.8
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
64.9
0.55
1.7
82.01
39.5

Associated Gene:

Gene:
DPYD
Ensembl Gene ID:
ENSAPLG00000012045
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046083
2220811 - 2558897
338087
ENSAPLT00000022824
2220811 - 2563107
342297
ENSAPLT00000012599
2220811 - 2563107
342297