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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24074166_24089527_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24074166 - 24089527
Intron Length:
15362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AACTCTTCATGT
Flanking Amino Acid:
LCQNAEDFSYSSTSFNRDAV
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80
34.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.3
0.82
0.7
81
24.1
Minor 5ss
43.5
-0.7
3
62.3
42.4
Minor BPS
44.7
-0.3
2
59.34
44.2

Associated Gene:

Gene:
AGBL4
Ensembl Gene ID:
ENSAPLG00000007966
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023179
23988524 - 24215523
227000
ENSAPLT00000037283
23988524 - 24205078
216555
ENSAPLT00000008261
23996693 - 24205078
208386
ENSAPLT00000036695
23988524 - 24256547
268024
ENSAPLT00000046167
23988524 - 24251074
262551
ENSAPLT00000027053
23988524 - 24203767
215244
ENSAPLT00000045911
23988524 - 24115540
127017
ENSAPLT00000023859
23988524 - 24256547
268024
ENSAPLT00000043598
23988761 - 24205078
216318