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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24181590_24203583_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24181590 - 24203583
Intron Length:
21994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CCCTCTTCAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
91.4
0.93
0.6
91.5
19.8
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
51.8
0.13
1.7
64.71
46

Associated Gene:

Gene:
AGBL4
Ensembl Gene ID:
ENSAPLG00000007966
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037283
23988524 - 24205078
216555
ENSAPLT00000036695
23988524 - 24256547
268024
ENSAPLT00000027053
23988524 - 24203767
215244
ENSAPLT00000023179
23988524 - 24215523
227000
ENSAPLT00000046167
23988524 - 24251074
262551