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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24203674_24205062_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24203674 - 24205062
Intron Length:
1389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
CCTCTGTCACCT
Flanking Amino Acid:
MVELQANLRPGAEQK
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
74.4
0.55
0.9
68.2
32
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
40.1
-0.6
2.3
56.4
46.2

Associated Gene:

Gene:
AGBL4
Ensembl Gene ID:
ENSAPLG00000007966
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043598
23988761 - 24205078
216318
ENSAPLT00000037283
23988524 - 24205078
216555
ENSAPLT00000008261
23996693 - 24205078
208386