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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24331127_24335673_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24331127 - 24335673
Intron Length:
4547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TACTACCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTACTA
Flanking Amino Acid:
MDKYILENGKVHLGSGIWVD
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72
0.5
0.9
62.8
39
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
53.7
0.11
1.8
68.77
37.8

Associated Gene:

Gene:
BEND5
Ensembl Gene ID:
ENSAPLG00000008052
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030385
24326988 - 24358276
31289
ENSAPLT00000030178
24326988 - 24892482
565495
ENSAPLT00000008354
24326988 - 24687390
360403