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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24335823_24342373_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24335823 - 24342373
Intron Length:
6551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTAACTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCTTAACT
Flanking Amino Acid:
QDVLLLRLGSGPAIELEKVK
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
66.8
0.38
1
58.3
42.7
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
87.2
1.25
1
95.32
31.5

Associated Gene:

Gene:
BEND5
Ensembl Gene ID:
ENSAPLG00000008052
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030178
24326988 - 24892482
565495
ENSAPLT00000008354
24326988 - 24687390
360403
ENSAPLT00000030385
24326988 - 24358276
31289