Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_244137_244646_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

244137 - 244646

Intron Length:

510

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGCAG

U12 Branch Point Sequence:

TCTGCAGCCACC

Flanking Amino Acid:

TQVKTWYQNRRTKWKRQTAV

Intron Amino Acid Position:

270

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

45.4

-0.2

1.8

59.3

47.1

Major PPT

66.2

0.37

0.9

61.5

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

36.4

-1

2.6

51.1

45.8

Associated Gene:

Gene:

BARHL2

Ensembl Gene ID:

ENSAPLG00000019725

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032786

243150 - 246830

3681