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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2447218_2450452_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2447218 - 2450452
Intron Length:
3235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATCTTTAATT
Flanking Amino Acid:
AELMKDLGVKVIFRKGLAMD
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
76.8
33.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.9
0.7
0.9
78.3
39.5
Minor 5ss
31.6
-2.1
3.1
39.6
45.9
Minor BPS
79.7
1.01
1
86.02
33.7

Associated Gene:

Gene:
DPYD
Ensembl Gene ID:
ENSAPLG00000012045
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022824
2220811 - 2563107
342297
ENSAPLT00000012599
2220811 - 2563107
342297
ENSAPLT00000046083
2220811 - 2558897
338087