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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24540300_24681882_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24540300 - 24681882
Intron Length:
141583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGTATGTCAATG
Flanking Amino Acid:
PMVKSTSRPKWQRIPSKNVY
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
44.2
-0.5
2.2
52.61
42.4

Associated Gene:

Gene:
BEND5
Ensembl Gene ID:
ENSAPLG00000008052
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030178
24326988 - 24892482
565495
ENSAPLT00000008354
24326988 - 24687390
360403