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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24681978_24862146_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24681978 - 24862146
Intron Length:
180169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTCCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
42.1
-0.9
2.4
51.8
44.8
Minor BPS
44.4
-0.4
3.6
74.12
37.8

Associated Gene:

Gene:
BEND5
Ensembl Gene ID:
ENSAPLG00000008052
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030178
24326988 - 24892482
565495