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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2475814_2518458_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2475814 - 2518458
Intron Length:
42645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
SERGALREAMRCLKCADAPC
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.74
0.7
78.4
30.3
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
DPYD
Ensembl Gene ID:
ENSAPLG00000012045
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046083
2220811 - 2558897
338087
ENSAPLT00000022824
2220811 - 2563107
342297
ENSAPLT00000012599
2220811 - 2563107
342297