About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24966037_24988117_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24966037 - 24988117
Intron Length:
22081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
SCKLVRDKITGQSLGYGFVN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
84.2
0.77
0.9
81
35.4
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
ELAVL4
Ensembl Gene ID:
ENSAPLG00000030449
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037236
24947350 - 25005575
58226
ENSAPLT00000033538
24947350 - 25005575
58226
ENSAPLT00000019427
24929119 - 25005575
76457
ENSAPLT00000047630
24946562 - 25005575
59014