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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_24988222_24998750_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24988222 - 24998750
Intron Length:
10529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTAAATCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTTCTTAAAT
Flanking Amino Acid:
GLRLQTKTIKVSYARPSSAS
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
65.3
0.34
0.9
58.3
37
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
77.9
0.95
1.3
88.72
36.1

Associated Gene:

Gene:
ELAVL4
Ensembl Gene ID:
ENSAPLG00000030449
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019427
24929119 - 25005575
76457
ENSAPLT00000047630
24946562 - 25005575
59014
ENSAPLT00000037236
24947350 - 25005575
58226
ENSAPLT00000033538
24947350 - 25005575
58226