About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25000958_25005247_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25000958 - 25005247
Intron Length:
4290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTCTTTTTACTT
Flanking Amino Acid:
NLLNMAYGVKRFSPITIDGM
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.1
0.59
1
73.9
36.4
Minor 5ss
35.2
-1.7
2.7
43.3
43.5
Minor BPS
56.3
0.28
1.6
69.97
42.5

Associated Gene:

Gene:
ELAVL4
Ensembl Gene ID:
ENSAPLG00000030449
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033538
24947350 - 25005575
58226
ENSAPLT00000019427
24929119 - 25005575
76457
ENSAPLT00000047630
24946562 - 25005575
59014