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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25132224_25132361_R

Intron Information:

Intron Rank:
130598
Intron Class:
major
Intron Phase:
Intron Coordinates:
25132224 - 25132361
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
TTTTCTCTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.1
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
80.7
0.69
0.8
74.8
34.8
Minor 5ss
28.4
-2.5
2.9
32.1
42.4
Minor BPS
59.8
0.29
2.1
78.9
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017505
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040290
25130874 - 25158379
27506