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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25132498_25134651_R

Intron Information:

Intron Rank:
130594
Intron Class:
major
Intron Phase:
Intron Coordinates:
25132498 - 25134651
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCTCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
89.8
0.9
0.6
84.3
23.7
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
62.1
0.24
1.8
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017505
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021516
25130874 - 25156264
25391