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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25132498_25146913_R

Intron Information:

Intron Rank:
130601
Intron Class:
major
Intron Phase:
Intron Coordinates:
25132498 - 25146913
Intron Length:
14416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCTCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
89.8
0.9
0.6
84.3
23.7
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
62.1
0.24
1.8
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017505
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042090
25130874 - 25156264
25391