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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25134702_25146913_R

Intron Information:

Intron Rank:
130595
Intron Class:
major
Intron Phase:
Intron Coordinates:
25134702 - 25146913
Intron Length:
12212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GTGATTTTACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
45.6
-0.2
1.9
60.13
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017505
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021516
25130874 - 25156264
25391