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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25146974_25155685_R

Intron Information:

Intron Rank:
130596
Intron Class:
major
Intron Phase:
Intron Coordinates:
25146974 - 25155685
Intron Length:
8712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTCCTCTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.2
0.72
0.8
76.7
30.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
54.4
0
1.7
59.89
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017505
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042090
25130874 - 25156264
25391
ENSAPLT00000021516
25130874 - 25156264
25391