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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25172615_25173431_R

Intron Information:

Intron Rank:
130603
Intron Class:
major
Intron Phase:
Intron Coordinates:
25172615 - 25173431
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCAGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATCTAAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.8
77.1
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71
0.47
1
65.7
40.1
Minor 5ss
21.3
-3.3
3.8
30.6
42.9
Minor BPS
49.7
-0
1.9
63.7
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017505
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045150
25170026 - 25173764
3739