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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25213106_25224467_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25213106 - 25224467
Intron Length:
11362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
AQQQEDIKDEDEREARENVK
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
FAF1
Ensembl Gene ID:
ENSAPLG00000002930
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028733
25194998 - 25339717
144720
ENSAPLT00000003018
25194998 - 25342007
147010