Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25227225_25237888_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25227225 - 25237888

Intron Length:

10664

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACTC

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCACATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

TTTTCCTCCACA

Flanking Amino Acid:

WDMTKEANRARFLTMCTRHF

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

35.3

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

0.45

0.8

65.6

29.3

Minor 5ss

36.5

-1.5

3.2

50.8

45.8

Minor BPS

67.6

0.55

83.78

36.8

Associated Gene:

Gene:

FAF1

Ensembl Gene ID:

ENSAPLG00000002930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028733

25194998 - 25339717

144720

ENSAPLT00000003018

25194998 - 25342007

147010