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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25247830_25248762_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25247830 - 25248762
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATT
Flanking Amino Acid:
LLQFTAEFSSRYGDCHPVYF
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.7
0.38
1
63.7
37
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
76.9
0.92
1.4
92.73
28.9

Associated Gene:

Gene:
FAF1
Ensembl Gene ID:
ENSAPLG00000002930
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003018
25194998 - 25342007
147010