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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25249896_25251589_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25249896 - 25251589
Intron Length:
1694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAA
U12 Branch Point Sequence:
TGTTTCTAAATA
Flanking Amino Acid:
PVQTREQSEEQCTDVHMVSD
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
64.6
0.36
1.3
64.8
42.4
Major PPT
70
0.45
1
67.2
38.3
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
66.3
0.51
1.6
75.34
36.5

Associated Gene:

Gene:
FAF1
Ensembl Gene ID:
ENSAPLG00000002930
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003018
25194998 - 25342007
147010