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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25251686_25274001_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25251686 - 25274001
Intron Length:
22316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
GCTTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATGGCTTTAAAA
Flanking Amino Acid:
GWPPSATDDSMTLAVSGLTF
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
84.6
0.78
0.7
80.6
31.5
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
60.9
0.34
1.5
66.61
40

Associated Gene:

Gene:
FAF1
Ensembl Gene ID:
ENSAPLG00000002930
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003018
25194998 - 25342007
147010