Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25313667_25317013_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25313667 - 25317013

Intron Length:

3347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTTTCTTGACG

Flanking Amino Acid:

DVVLEDSSTVGDIKRILENE

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

75.2

40.6

Major BPS

79.2

0.73

75.3

39.4

Major PPT

90.5

0.91

0.6

88.8

20.4

Minor 5ss

-1.6

3.3

45.6

43.8

Minor BPS

80.8

0.82

1.2

82.19

32.4

Associated Gene:

Gene:

FAF1

Ensembl Gene ID:

ENSAPLG00000002930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028733

25194998 - 25339717

144720

ENSAPLT00000003018

25194998 - 25342007

147010