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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25317223_25320040_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25317223 - 25320040
Intron Length:
2818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GCATATGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTATTCAAAC
Flanking Amino Acid:
VIPQENGILQSEYGGETLQG
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.9
0.45
1
65.3
45
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
56.8
0.19
1.8
73.17
37.3

Associated Gene:

Gene:
FAF1
Ensembl Gene ID:
ENSAPLG00000002930
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028733
25194998 - 25339717
144720
ENSAPLT00000003018
25194998 - 25342007
147010