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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25320088_25336946_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25320088 - 25336946
Intron Length:
16859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTTGATTGAAAA
Flanking Amino Acid:
LLEQNNWDLVAAINGVIPQE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
49.3
-0
1.8
66.51
39.6

Associated Gene:

Gene:
FAF1
Ensembl Gene ID:
ENSAPLG00000002930
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028733
25194998 - 25339717
144720
ENSAPLT00000003018
25194998 - 25342007
147010