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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25440754_25443789_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25440754 - 25443789
Intron Length:
3036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATATATTCATC
Flanking Amino Acid:
EEAIKLLERAKHNYKNYSME
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
46.7
-0.2
2
61.01
38.3

Associated Gene:

Gene:
TTC39A
Ensembl Gene ID:
ENSAPLG00000003729
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003841
25440633 - 25477552
36920