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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25443907_25444580_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25443907 - 25444580
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCAATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAAGATCT
Flanking Amino Acid:
AEGHFNYIYLNEKKIKYDHY
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76
0.59
0.9
71.8
32.9
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
46.4
-0.2
2.2
74.17
41.7

Associated Gene:

Gene:
TTC39A
Ensembl Gene ID:
ENSAPLG00000003729
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003841
25440633 - 25477552
36920