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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25448872_25449942_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25448872 - 25449942
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
PFGDNEVELFRIVPSLKLKI
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.5
0.8
0.8
82.4
34
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
TTC39A
Ensembl Gene ID:
ENSAPLG00000003729
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003841
25440633 - 25477552
36920