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Intron Name: Anas_platyrhynchos_platyrhynchos_8_25460106_25460856_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25460106 - 25460856

Intron Length:

751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGAAA

U12 Branch Point Sequence:

AACTGCATAACT

Flanking Amino Acid:

VKLGVGAFNLTLSMFPARIL

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

0.9

73.3

35.6

Major BPS

57.6

0.19

1.3

67.9

36.3

Major PPT

88.1

0.86

0.6

84.5

23.5

Minor 5ss

43.2

-0.7

2.4

52.2

38.7

Minor BPS

0.17

2.1

72.63

43.8

Associated Gene:

Gene:

TTC39A

Ensembl Gene ID:

ENSAPLG00000003729

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045069

25449572 - 25476678

27107

ENSAPLT00000003841

25440633 - 25477552

36920