Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25467019_25467505_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

25467019 - 25467505

Intron Length:

487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACATTA

5'SS Class:

major

3'SS Sequence:

CATGTAACACTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

CTCCATGTAACA

Flanking Amino Acid:

HRQSLEHFTEEEIHAEICYA

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

1.1

77.8

33.3

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

0.11

46.3

40.2

Minor 5ss

47.1

-0.3

2.9

65.1

46.1

Minor BPS

45.4

-0.3

2.1

57.02

42.6

Associated Gene:

Gene:

TTC39A

Ensembl Gene ID:

ENSAPLG00000003729

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045069

25449572 - 25476678

27107

ENSAPLT00000003841

25440633 - 25477552

36920