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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25491767_25493669_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25491767 - 25493669
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTAAAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTCTTTTAAAA
Flanking Amino Acid:
DPNNFANFSTYSTEEDMIEW
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
72.6
33.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.4
0.55
1
68.3
41.2
Minor 5ss
32.5
-2
2.8
43.1
43.9
Minor BPS
63.5
0.42
1.3
70.55
35

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303