About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25498697_25499233_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25498697 - 25499233
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AGATGTTTACTT
Flanking Amino Acid:
PFKDDPFGKIDPFGGDPFKG
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
62
0.3
1
62.3
30.4
Major PPT
80.4
0.68
0.8
77.9
36.2
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
47.4
-0.1
2
63.39
41.5

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303