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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25499270_25501241_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25499270 - 25501241
Intron Length:
1972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
EFFQSDPFVGSDPFKDDPFG
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303