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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25502498_25504347_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25502498 - 25504347
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTTATT
Flanking Amino Acid:
LQDSQQEINSVQTKLLELKE
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.4
51.7
46.6
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
86.2
0.82
0.8
80.1
32
Minor 5ss
32
-2.1
3.3
43.1
44.3
Minor BPS
53.2
0.18
1.9
75.33
41.2

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303