About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25518727_25519576_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25518727 - 25519576
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGATT
5'SS Class:
major
3'SS Sequence:
CATCTCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATGGTTTATTT
Flanking Amino Acid:
GLPSALLAHIWALCDTKDCG
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
75.2
40.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.6
0.53
1
65.2
40.8
Minor 5ss
36.9
-1.5
3.6
53.5
45
Minor BPS
47.8
-0
2
68.17
43.6

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303