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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25521541_25521860_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25521541 - 25521860
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCTCCAGTATT
Flanking Amino Acid:
GMLDRDEFAVAMFLVYCALE
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85.5
0.8
0.9
84.6
36
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
48.6
-0
2.1
73.82
42.9

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303