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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25521921_25522352_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25521921 - 25522352
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGAATC
5'SS Class:
major
3'SS Sequence:
TTTTGGTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAAAT
U12 Branch Point Sequence:
AATCCCTATATT
Flanking Amino Acid:
SKLPVDILGRVWELSDIDRD
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
72.7
37.1
Major BPS
50.5
0.01
1.1
57.3
34.4
Major PPT
72.3
0.5
1
69.5
41.6
Minor 5ss
39.3
-1.2
3.1
49.6
40.5
Minor BPS
49.1
0.02
2
68.94
42.1

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303