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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25522947_25523374_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25522947 - 25523374
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGACTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
LNLPVPPPRFTDTSSPLLLN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
61.1
43.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.7
0.78
0.7
86.7
25.9
Minor 5ss
38.1
-1.3
3.3
54.5
43.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303