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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25523471_25524471_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25523471 - 25524471
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTAACAAAATT
Flanking Amino Acid:
TDGKGILNKQEFFVALRLVA
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.7
36.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86
0.81
0.6
82.1
22.6
Minor 5ss
41.6
-0.9
3.6
64.2
47.3
Minor BPS
45.6
-0.2
2.1
67.74
42.7

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303