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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25524520_25524868_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25524520 - 25524868
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTGTCTGAATA
Flanking Amino Acid:
SGLTDLVLGKIWDLADTDGK
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.9
73.8
41.4
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
58.9
0.28
1.5
67.18
40

Associated Gene:

Gene:
EPS15
Ensembl Gene ID:
ENSAPLG00000004292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004514
25491620 - 25524922
33303