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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25601873_25610502_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25601873 - 25610502
Intron Length:
8630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GATTTTTTATTT
Flanking Amino Acid:
TILRHTLQLQGVDSAFVPTV
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
59.5
0.38
1.5
73.06
38.4

Associated Gene:

Gene:
OSBPL9
Ensembl Gene ID:
ENSAPLG00000001003
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042194
25588875 - 25636002
47128
ENSAPLT00000039781
25598649 - 25636002
37354
ENSAPLT00000001305
25587507 - 25636002
48496