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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25624310_25627259_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25624310 - 25627259
Intron Length:
2950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
ISTINPVDAVY
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
79.6
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.8
27
Minor 5ss
45.6
-0.5
2.8
59.8
40
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
OSBPL9
Ensembl Gene ID:
ENSAPLG00000001003
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022533
25624307 - 25636002
11696